SE3820002

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_8320
  • Solanum tuberosum
  • SE3820002
  • Mutator
  • M2
  • chr04:43660040-43660470
  • AACTATTTA
  • GGAAAAATTATAGAAATACCACAT

Secondary structure and sequence

TSD    TIR
5'



3' 
AACTATTTA  AA             AC     TTTA  TT    -  TACCATTATCCCCTATAAGTTTTACAAATCTCCAAAATTCCTTATTTTCGCGCATCACATTAGTGTATCTCGCGCATCAGATTATTGTATCAGCACTTATATTATTGTATCTCGCGCATCAGATTAATGTATCAGCGCTTATATTATTGTATCTCGCGCATCAGATTATTGT
         GG  AAATTATAGAAAT  CACAT    GT  ACTT AT                                                                                                                                                                            
         ||  |||||||||||||  |||||    ||  |||| ||                                                                                                                                                                             
         CC  TTTAATGTCTTTA  GTGTA    TG  AAAA TT                                                                                                                                                                            
ATTTATCAA  CG             --     ----  --    A  CCGTTTTAATTTAGATAGGAAATTTTCAAATATTAATATCTTTAAGGAGTTTGCCTATGTTATTATATTCGCAACTATGTAATTAGACTACGCGCTCTATGTAATTAGCAATTCATTCTATGTAATGTAAAATATGTACTATGTGATTAGACTACATGTAAAATATGTACTA
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

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