SE3810006

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_8324
  • Solanum tuberosum
  • SE3810006
  • Tc1/Mariner
  • St1
  • chr10:24750119-24750389
  • TA
  • TACTCCCTCTGTCCCTAATTACTTGTTCATTTT

Secondary structure and sequence

TSD    TIR
5'



3' 
            C                    -TT    TTGTTCCTAATTACTTGTCCATTTTGGCAAATCAAGAAAAAATATTTTTTTTACCTATTGTACCCTCCATTAATTACTTTGAAAAAGGTAGAACTT
TACTCCCTCTGT CCTAATTACTTGTTCATTTT   TTAG                                                                                                
|||||||||||| ||||||||||||||||||||   ||||                                                                                                 
ATGAGGGAGACA GGATTAATGAACAGGTGAAA   AACC                                                                                                
            A                    CTT    GTGTGGATAATTCTTTTGTTACTAACTGTATCACTCAAATGGTAAAATGGAGATAATTAATACTTCATCTACTTAATTTTTGAAGTCTAAAAGTTT
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

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