SE3820009

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_8327
  • Solanum tuberosum
  • SE3820009
  • Mutator
  • M6
  • chr03:15886626-15886971
  • TATTTTTTA
  • TAGGGATAAGGGTCTGAAAAATACTCCAATTTTGGCCGAAATTGCTGTTACGATACCAAACTTTGAAAATGACTTTTTACCCCCCT

Secondary structure and sequence

TSD    TIR
5'



3' 
TATTTTT             C                              C     C                  T                A      TTAATAGTACCTTTTACCCCTTGTACTATTTAATAGTGTATTTTAAAGATATATATGTGTCTACATGGACATC
       TAGGGATAAGGGT TGAAAAATACTCCAATTTTGGCCGAAATTG TGTTA GATACCAAACTTTGAAAA GACTTTTTACCCCCCT TACTAT                                                                         
       ||||||||||||| |||||||||||||||||||||||||||||| ||||| |||||||||||||||||| |||||||||||||||| ||||||                                                                         A
       ATCCCTATTCCCA ACTTTTTATGAGGTTGAAACCGGCTTTAAC ACAAT CTATGGTTTGAAACTTTT CTGGAAAATGGGGGGG ACGTGA                                                                         
ATTTTTT             T                              A     A                  C                -      TAAATTATCACATAAAATTTCCATATATACACGGGTGCACCTGTGTAATAATTAATTTTACTGCATTATAAAT
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

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