SE3820010

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_8328
  • Solanum tuberosum
  • SE3820010
  • Mutator
  • M7
  • chr10:3145664-3146049
  • TATTTACTA
  • TAGAGAGAAGTAATGAAGACACCCTTGAACTTGACGCAAATTATTAGTTTCATTTCGAACTATTGATAACATTAAAAATATCTCTCTACTTGACTAACTAAACTTAGATACACACCTGATCTGCTACATGA

Secondary structure and sequence

TSD    TIR
5'



3' 
TATTTAC            A         C             CA                -            T   A              C           CTA           A A        -  T      CATAACAA   G  --- C   CTCTTGTAGGAGCATGAAACTTTTAATAAAAGTTGAGA
       TAGAGAGAAGTA TGAAGACAC CTTGAACTTGACG  AATTATTAGTTTCATT TCGAACTATTGA AAC TTAAAAATATCTCT TACTTGACTAA   AACTTAGATAC C CCTGATCT GC ACATGA        ATG TC   T ACA                                      
       |||||||||||| ||||||||| |||||||||||||  |||||||||||||||| |||||||||||| ||| |||||||||||||| |||||||||||   ||||||||||| | |||||||| || ||||||        ||| ||   | |||                                      G
       ATCTCTCTTTAT ACTTTTGTG GGATTTGAGCTGC  TTAATAATCAAAGTAG AGCTTGATAACT TTG AATTTTTGTGGAGA ATGAACTGATT   TTGAATTTATG G GGGCTAGA CG TGTACT        ACT TT   T GGG                                      
ATCATTT            A         A             AC                G            T   G              A           AAC           C -        A  C      -------T   -  ATA -   GATTAAAAAACAGTTTAAATTCTCACAAAAGTTGTGAA
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

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