Plant MITE

SE3810011

Basic info.

MITE ID
Species
MITE identifier
Superfamily
Family
Genomic location
TSD
TIR

MITE_8329
Solanum tuberosum
SE3810011
Tc1/Mariner
St2
chr01:72013200-72013443
TA
TACTCCCTCCGTCCCATTTTATATGATGTACTTT

Secondary structure and sequence

TSD TIR

5'

3'

         C      T          G      GAT         ACTTTAAGAAAAATGGAAAGACTTTTAAAACTTGTGGTCCAAAATGAATGATAGAAATTTGTGTGGTTGTAAATCAT
TACTCCCTC GTCCCA TTTATATGAT TACTTT   TTGGCACAA                                                                             
||||||||| |||||| |||||||||| ||||||   |||||||||                                                                             T
ATGAGGGAG CAGGGT AAATATACTG GTGAAA   GGAAAAATC                                                                             
         A      T          A      ---         AGTCAGGGTTTTTTCTTACTGTGTAAAGATAAAATTCATTGTTAAACGGATATTTTACAGAAAAAATGGGAATTACT

Get MITE sequence

MITE cluster

MITE ID	MITE identifier	Chr	Start	End
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12

Closed gene

MITE ID	MITE identifier	Chr	Start	End

>SE3810011

TACTCCCTCCGTCCCATTTTATATGATGTACTTTGATTTGGCACAAACTTTAAGAAAAATGGAAAGACTTTTAAAACTTGTGGTCCAAAATGAATGATAGAAATTTGTGTGGTTGTAAATCATTTCATTAAGGGTAAAAAAGACATTTTATAGGCAAATTGTTACTTAAAATAGAAATGTGTCATTCTTTTTTGGGACTGACTAAAAAGGAAAGTGAGTCATATAAATTGGGACAGAGGGAGTA

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