Plant MITE

SE3820012

Basic info.

MITE ID
Species
MITE identifier
Superfamily
Family
Genomic location
TSD
TIR

MITE_8330
Solanum tuberosum
SE3820012
Mutator
M8
chr04:2166190-2166501
TTTTGGAAT
TTTGGAATGGCATAATACATAAATGTGCCCTTTAACTTGACCTCATTTCACATTTATGCCCTTCAACTTTGGGTATGCACAAGTAGACACTTAAACTTGTATAAATCTGAACAAGTAGACACATGAGTCCTATGTAGCACAATACACGT

Secondary structure and sequence

TSD TIR

5'

3'

T   G   T                               A C   TT                           A                               C                  A         A   CAA    C  AGGACA
 TTT GAA GGCATAATACATAAATGTGCCCTTTAACTTG C TCA  TCACATTTATGCCCTTCAACTTTGGGT TGCACAAGTAGACACTTAAACTTGTATAAAT TGAACAAGTAGACACATG GTCCTATGT GCA   TACA GT      
 ||| ||| ||||||||||||||||||||||||||||||| | |||  ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |||||||||||||||||| ||||||||| |||   |||| ||      A
 AAG TTT CCGTATTATGTATTTATACGGGAAATTGAAC G AGT  AGTGTAAATACGGGAAGTTGAAACTCA ACGTGTTCATCTGTGGATTTGAACATATTTA ACTTGTTTATCTGTGTGT CAGGATGTA CGT   ATGT CA      
T   G   T                               C A   TT                           C                               -                  A         C   AGA    A  GTAAAA

Get MITE sequence

MITE cluster

MITE ID	MITE identifier	Chr	Start	End
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12

Closed gene

MITE ID	MITE identifier	Chr	Start	End

>SE3820012

TTTTGGAATGGCATAATACATAAATGTGCCCTTTAACTTGACCTCATTTCACATTTATGCCCTTCAACTTTGGGTATGCACAAGTAGACACTTAAACTTGTATAAATCTGAACAAGTAGACACATGAGTCCTATGTAGCACAATACACGTAGGACAAAAAATGACATGTAAGATGCCATGTAGGACATGTGTGTCTATTTGTTCAATTTATACAAGTTTAGGTGTCTACTTGTGCACACTCAAAGTTGAAGGGCATAAATGTGATTTGAAGCCAAGTTAAAGGGCATATTTATGTATTATGCCTTTTGGAAT

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