SE3830014

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_8332
  • Solanum tuberosum
  • SE3830014
  • hAT
  • Hat2
  • chr10:41409130-41409532
  • CAGTTTAT
  • CAGAGGCGTATCCAG

Secondary structure and sequence

TSD    TIR
5'



3' 
CAGTTTAT           C   TA      ---       TGTGCATTATTATGAAAATGTGGATCTAATCGGTTTGACATTTAGGTTTGTATCATTGAATTAAAAATTTAAATCTATAGGTCTAAAATTGAAATGATTAATTAATTAAAACGCCAAAAGTGCTACCAATAACCACTTAGAGAGGTGTTGCCTAATTTTAGAA
        CAGAGGCGTAT CAG  TTTTAT   AATGATG                                                                                                                                                                   
        ||||||||||| |||  ||||||   |||||||                                                                                                                                                                    
        GTCTCCGCATA GTC  TTCCCC   TGGCCCA                                                                                                                                                                   
CATTTGAC           C   --      CAG       AATGCACTTGGGTACAAAAGGAGGAATTTAGTATATACCATAATAATATAAAAATTTAAAAATAATTTATATCTACACACTTCGGTGTTAACTTCATAGTATATTACGTTACTACTAACCCTAATCTTTAAACTTAAAATATATATACAACATAATAAAAAGA
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

Copyright ©.   Contact us: contact@pmite.com   京ICP备2022028499号-3