SE3820015

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_8333
  • Solanum tuberosum
  • SE3820015
  • Mutator
  • M10
  • chr09:46112407-46112946
  • TATTTATTA
  • TAGGGAAAA

Secondary structure and sequence

TSD    TIR
5'



3' 
TATTTAT         TTGTGCA     A    --------  TTTAAACAATATTAAATGCTATAGCTATTGTTTTGAAAAATTGTGATTCGCAACAATAGTTTCCCCAAACCTTGTTATTTGTTTAATTTGTATTTCACCTAAAATTGTATAATTAGCCTGATTGTATAAATCAAAATTTTATATAGTTCGGTTCATGATTGTATAAATCTAGAATTTGTATATGCTTACCCTAGCTATTTGTATATAATTTATGAAAAATTCACAATAAAT
       TAGGGAAAA       GAATA CAAA        CA                                                                                                                                                                                                                                       
       |||||||||       ||||| ||||        ||                                                                                                                                                                                                                                       T
       ATCTCTTTT       TTTAT GTTT        CG                                                                                                                                                                                                                                       
ATTATAC         -TAATTC     C    ATATTATC  TATCATTCCGAGATATCGACATTAAAACTATTAACACGAAGTATTGATATCAAAATAAACGATATTTCCAACACCAAACATATAAAGCGCGCCAAACATATAAAACGAACAGGTAAACGTGTAAAGCGAACGCATGTTTATCCCATTCATATATATTTAAAACATGAACATGTAATTACTTAAAAAGTTTTGAGGCAAACATATAAAGTGAACGGTTATATGTTTGTCCCA
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

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