Plant MITE

SE3820017

Basic info.

MITE ID
Species
MITE identifier
Superfamily
Family
Genomic location
TSD
TIR

MITE_8335
Solanum tuberosum
SE3820017
Mutator
M11
chr04:17183696-17184019
TTCTTTCTT
GGGACAAGGCACAAGTACTCCTCTTGATTATGATCAAAATCTCAGAGACACACCTTAACTAAACTAAGGTCCTATTACCCCCTGAACTCATTTTTTTTTGGTAATTTTGTACACATTTTGGCTTACGTGACACATTCTGTGACTCCACGCA

Secondary structure and sequence

TSD TIR

5'

3'

TTCTTTCTT    C    C         C    T          -   A   C          C         C       C        C           T     TGG                               CA   -T   A    -     GTT
         GGGA AAGG ACAAGTACT CTCT GATTATGATC AAA TCT AGAGACACAC TTAACTAAA TAAGGTC TATTACCC CTGAACTCATT TTTTT   TAATTTTGTACACATTTTGGCTTACGTGACA  TTC  GTG CTCC ACGCA   
         |||| |||| ||||||||| |||| |||||||||| ||| ||| |||||||||| ||||||||| ||||||| |||||||| ||||||||||| |||||   |||||||||||||||||||||||||||||||  |||  ||| |||| |||||   G
         CCCT TTCC TGTTCATGG GGGA CTGATATTGG TTT AGA TCTCTGTGTG AATTGATTT ATTCCAG ATAATGGG GATTTGAGTAA AAAAA   ATTAAAATATGTGTAAAACCGAATGTACTGT  AAG  TAT GAGG TGCGT   
TTCTTTCTT    A    A         A    T          C   A   -          T         A       T        A           T     ---                               --   TT   A    A     GGA

Get MITE sequence

MITE cluster

MITE ID	MITE identifier	Chr	Start	End
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12

Closed gene

MITE ID	MITE identifier	Chr	Start	End

>SE3820017

TTCTTTCTTGGGACAAGGCACAAGTACTCCTCTTGATTATGATCAAAATCTCAGAGACACACCTTAACTAAACTAAGGTCCTATTACCCCCTGAACTCATTTTTTTTTGGTAATTTTGTACACATTTTGGCTTACGTGACACATTCTGTGACTCCACGCAGTTGAGGTGCGTAGGAGATATTTGAATGTCATGTAAGCCAAAATGTGTATAAAATTAAAAAATAATGAGTTTAGAGGGTAATATGACCTTAATTTAGTTAATGTGTGTCTCTAGAATTTCGGTTATAGTCTAGGGAGGTACTTGTACCTTATCCCTTCTTTCTT

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