Plant MITE

SE3810018

Basic info.

MITE ID
Species
MITE identifier
Superfamily
Family
Genomic location
TSD
TIR

MITE_8336
Solanum tuberosum
SE3810018
Tc1/Mariner
St3
chr01:16381250-16381517
TA
TACTCCCTCCGTTCAACAATATTTGTCCACTATACTATTTTG

Secondary structure and sequence

TSD TIR

5'

3'

         C                 CA    ACT         -  TCCAACAATACTTATCCACTTTATAAAATCAAGGGATAATTTTACACTCAGTTCATAATTTACCCTTATCATTAATTATAGTCATTT
TACTCCCTC GTTCAACAATATTTGTC  CTAT   ATTTTGGGA TG                                                                                       
||||||||| |||||||||||||||||  ||||   ||||||||| ||                                                                                        
ATGAGGGAG CAGGTTGTTATGAACAG  GATA   TGAAACGTG GA                                                                                       
         A                 AG    -AC         T  AGAATTCTTTAATATTTATCTTACAATTAAAATGATATAGTAGGAAACTTATATTATTTATATTACAGAAACTTATTACATTAACTG

Get MITE sequence

MITE cluster

MITE ID	MITE identifier	Chr	Start	End
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12

Closed gene

MITE ID	MITE identifier	Chr	Start	End

>SE3810018

TACTCCCTCCGTTCAACAATATTTGTCCACTATACTATTTTGGGATGTCCAACAATACTTATCCACTTTATAAAATCAAGGGATAATTTTACACTCAGTTCATAATTTACCCTTATCATTAATTATAGTCATTTGTCAATTACATTATTCAAAGACATTATATTTATTATATTCAAAGGATGATATAGTAAAATTAACATTCTATTTATAATTTCTTAAGAAGTGTGCAAAGTCAATAGGAGACAAGTATTGTTGGACAGAGGGAGTA

Copy Cancel