Plant MITE

SE3810019

Basic info.

MITE ID
Species
MITE identifier
Superfamily
Family
Genomic location
TSD
TIR

MITE_8337
Solanum tuberosum
SE3810019
Tc1/Mariner
St4
chr08:23056899-23057135
TA
TACTACCTCCGTCCACTTTTAATTGTCATAGTTTCATTTTTAGAGTCAAA

Secondary structure and sequence

TSD TIR

5'

3'

    A   CC   C       A       A   -TCA     -         CTATAAAAAC           TTT  -------    TT TTTTTTCATCATATTGTATTTTTCATATAGTTTTTGAAT
TACT CCT  GTC ACTTTTA TTGTCAT GTT    TTTTT AGAGTCAAA          TTTGACTAACA   TA       TGAT  A                                       
|||| |||  ||| ||||||| ||||||| |||    ||||| |||||||||          |||||||||||   ||       ||||  |                                        
ATGA GGA  CAG TGAAAAT AACAGTA CAA    AAAAA TTTTAGTTT          AAACTGATTAA   AC       CTTA  A                                       
    G   AA   C       A       -   TGCG     C         ----------           ---  GTTTCAA    -- TCTAATGTAATTAAGCTATAAAGTTTGTTTTTATATCTA

Get MITE sequence

MITE cluster

MITE ID	MITE identifier	Chr	Start	End
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12

Closed gene

MITE ID	MITE identifier	Chr	Start	End

>SE3810019

TACTACCTCCGTCCACTTTTAATTGTCATAGTTTCATTTTTAGAGTCAAACTATAAAAACTTTGACTAACATTTTATGATTTATTTTTTCATCATATTGTATTTTTCATATAGTTTTTGAATATCTATATTTTTGTTTGAAATATCGAATTAATGTAATCTAATTCAACTTTGCAAATTAGTCAAATTTGATTTTCAAAAAGCGTAACATGACAAATAAAAGTCGACAAAGGGAGTA

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