SE3850022

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_8340
  • Solanum tuberosum
  • SE3850022
  • PIF/harbinger
  • To4
  • chr08:34822461-34823162
  • TAA
  • GCTAGCGTTTGACCATAGATTTTCAAATATTTTTGGCAAATA

Secondary structure and sequence

TSD    TIR
5'



3' 
  TAA   AG      A           -   ---      ----------          TTATATG     AATTTCACCATGTGTTTGGCCATAATATTTGAGAAATATATTTTACTTTTTTAATAAATATGATTATATCCATAAGTTTTAAAAACTATCAAAATTAACCATATGTTTGTATTACATAGTAATATAGAAACGTCGACGTAACAAGATTCATGACTTCCGCAACAAGTCCATTGTATCTTCGTTGCAACAAATAATAAGTAGTGTTCGTGACATTGGAGCAATGTTGTAGTTTGGAGTGAGTGCAACAAGCATCATTCCATACATTGTAAAGTAGACGAAACACATGACTT
     GCT  CGTTTG CCATAGATTTT CAA   ATATTT          TTGGCAAATA       GGTGA                                                                                                                                                                                                                                                                                                  
     |||  |||||| ||||||||||| |||   ||||||          ||||||||||       |||||                                                                                                                                                                                                                                                                                                  T
     TGG  GCAAAC GGTATCTAAAA GTT   TATAAA          AACCGTTTAT       CACAA                                                                                                                                                                                                                                                                                                  
AATCC   --      C           A   CAT      CCCCCCCTTA          -------     ACAAAGTATATTAAATGGTAATAAACCATTTTTAAAAACCGTTTATTGGGTTTAAGAGTTTATGATCTTTTTTGATCATAAAACCGGTTTAGAGTAATAAACCCTTGAAAATTTTTAAGTTTAAGATGTGGTTTTAAAATAAAAAATATTTTTGTGGGAGATATCATAAACAAACGTAACATAATGTATCAAAAAGTGCACTTGTGGTTTCGTCACTACTTTATAAGTTACTTATACTTTCACTACTATACCAACAAGTACTTTTACTGCTTGTTAGTTGAATCCCATTA
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

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