SE3830024

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_8342
  • Solanum tuberosum
  • SE3830024
  • hAT
  • Hat4
  • chr04:8511503-8511800
  • AAGGAGGG
  • CAGGGGCGGACCTA

Secondary structure and sequence

TSD    TIR
5'



3' 
AAGGAGGG   G  C       -CCTTG    -           ---      --------------------------------CACACTTCG      ---  --   C    T  ATACATATATATTCAATCTATTTTTTTGAAACAAAACATTGTATATAATTAA
        CAG GG GGACCTA      TTGC AAGTGGGTTCA   TATGAA                                         TCGAAA   AA  ATA ATTG AT                                                    
        ||| || |||||||      |||| |||||||||||   ||||||                                         ||||||   ||  ||| |||| ||                                                     
        GTC CC CCTGGGT      AATG TTCACCCAAGT   ATATTT                                         TGTGCG   CG  GTC GTTT AC                                                    
GGGAGGAA   A  A       CTTTAA    G           TGT      TTTTTTACTTCGTCATAATTTTACAACACCCACCCTTAGCA      CTA  TA   A    A  ATTGGTGAAACGGCGATCCGACGCACAATGATAACTAAATTCACCCCAGTTT
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

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