Plant MITE

SE3830025

Basic info.

MITE ID
Species
MITE identifier
Superfamily
Family
Genomic location
TSD
TIR

MITE_8343
Solanum tuberosum
SE3830025
hAT
Hat2
chr08:35653959-35654374
TGTTGATG
GTTGATGCAGAGGCGTATCC

Secondary structure and sequence

TSD TIR

5'

3'

T                    -------  -      - T  CCA    ---- ACGTGAACCCATGCTCCCCTCCTGAAATCATAAATAGTAGTGTTATATTTTTTAAAAAAATATTAAAATATAGATATGTGAACCCATAGTTGAAGTATCATACCGTGCGATTCTGATTAGGTGCACCTCTCTAAGTGAGGTTAGAAATTTGAATCTTTTATT
 GTTGATGCAGAGGCGTATCC       AG GAGGGG G CA   GGTT    C                                                                                                                                                                  
 ||||||||||||||||||||       || |||||| | ||   ||||    |                                                                                                                                                                  T
 TAGTTGTGTCTCCGCATAGG       AC CTACTA C CA   CGTG    T                                                                                                                                                                  
G                    TCTTAAA  T      C -  ---    ATAA GCTTTTCCAGCTAGATTCTATATTTAAACTAGCTAAATTGTAAATCCAAGAATAGTGATTTATATTAATTTTAAAATTTTAATATCCAGGTTTTAATAAAAATGGATAGGTTTGGTGAATCTCTCCGCAGTAAGTTTAAATCTTTACTTTTATTTTACTCTA

Get MITE sequence

MITE cluster

MITE ID	MITE identifier	Chr	Start	End
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12

Closed gene

MITE ID	MITE identifier	Chr	Start	End

>SE3830025

TGTTGATGCAGAGGCGTATCCAGGAGGGGGTCACCAGGTTCACGTGAACCCATGCTCCCCTCCTGAAATCATAAATAGTAGTGTTATATTTTTTAAAAAAATATTAAAATATAGATATGTGAACCCATAGTTGAAGTATCATACCGTGCGATTCTGATTAGGTGCACCTCTCTAAGTGAGGTTAGAAATTTGAATCTTTTATTTATCTCATTTTATTTTCATTTCTAAATTTGAATGACGCCTCTCTAAGTGGTTTGGATAGGTAAAAATAATTTTGGACCTATAATTTTAAAATTTTAATTATATTTAGTGATAAGAACCTAAATGTTAAATCGATCAAATTTATATCTTAGATCGACCTTTTCGTAATAGTGCACCCATCATCTCAAAATTCTGGATACGCCTCTGTGTTGATG

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