SE3820027

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_8345
  • Solanum tuberosum
  • SE3820027
  • Mutator
  • M16
  • chr09:7860504-7861159
  • GCAACCTTT
  • TGAGAAAAGGCCCAAAATAGTCCCTCATCTTTGGGTTAAGACTCAAAGTCATCCTTGAGTTTTCACATAGAGCATTAATAGTCTCTCATATTTGCAATATTGGTGCACTTTTGGTCCTCCTTCAAAATTTTGCCTATATTTTAACATTGATTTTATTCACAATTTATGTATGGAATGTTTAATCGTCATTTTATATATTTAGTAGAAATAATAACTTCATGTGAGAAGAAAAACACATTGTTTTGTTTAGTATAAATCATATTGCAGGTAAA

Secondary structure and sequence

TSD    TIR
5'



3'
GCAACCTTT     A                          G        C       C                  A                    A                            -    C   A          A                A    C     -     T         A      A                          C   -        -------    --A     A                    CA        G    ----AT    AGGTTCATCACGACGATTTCACGTGCAATGGTAC
         TGAGA AAGGCCCAAAATAGTCCCTCATCTTT GGTTAAGA TCAAAGT ATCCTTGAGTTTTCACAT GAGCATTAATAGTCTCTCAT TTTGCAATATTGGTGCACTTTTGGTCCT CCTT AAA TTTTGCCTAT TTTTAACATTGATTTT TTCA AATTT ATGTA GGAATGTTT ATCGTC TTTTATATATTTAGTAGAAATAATAA TTC ATGTGAGA       AGAA   AACAC TTGTTTTGTTTAGTATAAAT  TATTGCAG TAAA      AGAG                                  
         ||||| |||||||||||||||||||||||||| |||||||| ||||||| |||||||||||||||||| |||||||||||||||||||| |||||||||||||||||||||||||||| |||| ||| |||||||||| |||||||||||||||| |||| ||||| ||||| ||||||||| |||||| |||||||||||||||||||||||||| ||| ||||||||       ||||   ||||| ||||||||||||||||||||  |||||||| ||||      ||||                                   
         GCTCT TTCCGGGTTTTATTAGGGAGTAGAAA TCAATTCT AGTTTCA TAGGAACTCAAAAGTGTA CTCGTGATTATCAGGGAGTA AAACGTTATAACCACGTGAAAACCAGGA GGGA TTT AAAACGGATA AAAATTGTAATTAAAA AAGT TTAAA TACAT CCTTACAGA TAGCAG AAAATATATAAATCATCTTTATTATT AAG TACACTCT       TCTT   TTGTG AACAAGACAAGTCATATTTA  ATGACGTC ATTT      TGTA                                  
TTTTCCAAC     C                          A        C       A                  C                    C                            A    -   A          A                C    A     A     T         G      A                          -   A        CTTCCAC    CTC     G                    TA        G    GATTCT    AAATTGTACACTGTAACGTTCTTTTCTTTTTAAA

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End