SE3820028

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_8346
  • Solanum tuberosum
  • SE3820028
  • Mutator
  • M17
  • chr05:53146372-53146764
  • TTTTTAATA
  • GGGAAAATTACGC

Secondary structure and sequence

TSD    TIR
5'



3' 
 TTTTTAATA     AA  A   ---- GT    TAAACTTATACTACTTAATTACTCATCATAGGTATAATTTGCTATAATTACCACTCACGACTAATATTATACATTAATTACGCGGGCTGACTTCGAGTTTGTATAATTAGCCACGTTTGTATATGTATAATTCGCCAGAATATACAAATACATATGTATAATATAC
          GGGAA  TT CGC    G  TAAG                                                                                                                                                                      
          |||||  || |||    |  ||||                                                                                                                                                                      A
          CCCTT  AA GTG    T  CGGT                                                                                                                                                                      
ATAATTTTTC     GA  -   TATA --    GATTTTTTATCGGATTAATGAGAGGTATCGATATCAAACTATTAATGTTAAGCATCGATGTACAATATACCTCCTCTCTCCGCTCGCTCTGACCCTCTCTCTCCACTCTCTCTCCCCCGTTTTTCACCCTCTTTCCACTTAACATATACATATATCCAATCTATTA
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

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