SE3830031

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_8349
  • Solanum tuberosum
  • SE3830031
  • hAT
  • Hat5
  • chr05:20848045-20848553
  • ATCAAAAC
  • TAGGGGTGTCAAATGGGC

Secondary structure and sequence

TSD    TIR
5'



3' 
ATCAAAAC            --      GGGTTAGA   --      G   ---------------- ATTA   --   ATAGAATAG    -     T     T   CCTACCGAAGTTTACGTTAGGCTCAAATGGGCTCAAAGTTGGGTTGGGTCATGATCTACCCAATTTGACCCATTTAATCTGAATAATTTTAAAATATTATTATTTAATTTTATAACCACAATTTGAATTTCAACTAAAGAACATTTAAAAAAATACAAATGGATAGAT
        TAGGGGTGTCAA  ATGGGC        TTG  AAATTA AGA                T    AAA  TGG         AAAT TGGGT GGGTC TGA                                                                                                                                                                        
        ||||||||||||  ||||||        |||  |||||| |||                |    |||  |||         |||| ||||| ||||| |||                                                                                                                                                                        A
        ATCCCCACAGTT  TACTCG        GGT  ATATCC TTG                C    CCA  CCG         AGTT TATTA AATTT AAC                                                                                                                                                                        
CAAAACTA            TT      --------   TT      A   GGCGGGTCTTAAAATT ----   AC   ---------    C     -     -   CCAAGTTATAGTTTGGTAAGTTCGGAACTGGGTAAAATTCTCTTAGGAGTTAACCCGGGTTAAATTAGAAGTTAAAGTTGGGTAAAATTCTGAGAAATAAACGTAACAACATTACATACAAGGATATTACTTCACATACGTAATGATAAATAAAATATATAAATTTGA
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

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