Plant MITE

SE3810033

Basic info.

MITE ID
Species
MITE identifier
Superfamily
Family
Genomic location
TSD
TIR

MITE_8351
Solanum tuberosum
SE3810033
Tc1/Mariner
St6
chr10:4064046-4064307
TA
TCCCTCTGTCCCAATTTATGTGGCACTTTTCATTTTTCGAGAGTCAAACAGTTTAAGTTTGACCG

Secondary structure and sequence

TSD TIR

5'

3'

TAC     C     CAA                 ATT        G       -     AG   G    --------------GAAA         --AA   C          T   AA   -AA   ATATATTTGTAA
   TCCCT TGTCC   TTTATGTGGCACTTTTC   TTTCGAGA TCAAACA GTTTA  TTT ACCG                  TTTGAGCAT    AAT TTCAATTATT TGA  TGA   TTT            
   ||||| |||||   |||||||||||||||||   |||||||| ||||||| |||||  ||| ||||                  |||||||||    ||| |||||||||| |||  |||   |||             
   AGGGA GTAGG   AAATATACTGTGAAAAG   AAAGCTCT AGTTTGT CAAAT  AAA TGGC                  AAATTTGTA    TTA AAGTTAATAA ACT  ACT   ATG            
ATA     A     -TA                 CTT        A       T     AA   A    ATTCAAAAAATATCTAGA         AAAC   A          C   -G   ATC   AAAAATGCATCA

Get MITE sequence

MITE cluster

MITE ID	MITE identifier	Chr	Start	End
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12

Closed gene

MITE ID	MITE identifier	Chr	Start	End

>SE3810033

TACTCCCTCTGTCCCAATTTATGTGGCACTTTTCATTTTTCGAGAGTCAAACAGTTTAAGTTTGACCGGAAATTTGAGCATAAAATCTTCAATTATTTTGAAATGAAATTTATATATTTGTAAACTACGTAAAAAGTACTATCAGTCACAATAATTGAAAATTCAAAATGTTTAAAAGATCTATAAAAAACTTACGGTAAAAAATAAACTTGTTTGAATCTCGAAATTCGAAAAGTGTCATATAAAATGGATGAAGGGAATA

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