SE3820036

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_8354
  • Solanum tuberosum
  • SE3820036
  • Mutator
  • M4
  • chr08:6406085-6406288
  • TTATATTTT
  • GGAAAGTGCTAAATGGCCAGAAAATT

Secondary structure and sequence

TSD    TIR
5'



3' 
TTATATTTT      TG  AAA             AAAAA     ATA       T     T   --A   AAATT         T  A    TTAG    AAA
         GGAAAG  CT   TGGCCAGAAAATT     AAAGT   ATATTTT TTTAT TTA   AAT     GATGTTTTT CC TTTT    TTAA   
         ||||||  ||   |||||||||||||     |||||   ||||||| ||||| |||   |||     ||||||||| || ||||    ||||    
         CCTTTT  GA   ACCGGTCTTTTAA     TTTTA   TATAAAA AGATA AAT   TTG     TTATAAAAA GG AAAA    AATT   
TTTTATATT      TA  AAA             ACCGG     --C       T     C   AAA   AAAAT         T  G    TTGA    ATG
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

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