Plant MITE

SE3810038

Basic info.

MITE ID
Species
MITE identifier
Superfamily
Family
Genomic location
TSD
TIR

MITE_8356
Solanum tuberosum
SE3810038
Tc1/Mariner
St7
chr05:60969149-60969460
TA
TACTCCCTCCATTTCAAAATAAGTGAATTGTTGAG

Secondary structure and sequence

TSD TIR

5'

3'

     C   C                ATT      -  AATGCACACCCATTAAGAAAAAAAATTTAGGACATAAAATAAAAACCACTTTCCACTTTTGCCCCTTTAGTTATTCTCAAACTATTCTTGAAAATATAAATAATTCAAAGTAAAATCATA
TACTC CTC ATTTCAAAATAAGTGA   GTTGAG GC                                                                                                                        
||||| ||| ||||||||||||||||   |||||| ||                                                                                                                         
ATGAG GAG TAAAGTTTTATTCACT   CAACTC GA                                                                                                                        
     A   T                ---      G  AAAAGGTATCAAGTTTTATTCACTTAACAAGTTTCAAGTTCTCTCAACATAAAAAAGGGTAATAACGGGGAGTAAATATAGAAAAAACACTATTAAAGTTCTCTCAATTAACAAGTACAA

Get MITE sequence

MITE cluster

MITE ID	MITE identifier	Chr	Start	End
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12

Closed gene

MITE ID	MITE identifier	Chr	Start	End

>SE3810038

TACTCCCTCCATTTCAAAATAAGTGAATTGTTGAGGCAATGCACACCCATTAAGAAAAAAAATTTAGGACATAAAATAAAAACCACTTTCCACTTTTGCCCCTTTAGTTATTCTCAAACTATTCTTGAAAATATAAATAATTCAAAGTAAAATCATAAACATGAACAATTAACTCTCTTGAAATTATCACAAAAAAGATATAAATGAGGGGCAATAATGGGAAAAAATACAACTCTCTTGAACTTTGAACAATTCACTTATTTTGAACTATGGAAAAAGGCTCAACTCACTTATTTTGAAATTGAGAGAGTA

Copy Cancel