SE3850039

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_8357
  • Solanum tuberosum
  • SE3850039
  • PIF/harbinger
  • To5
  • chr04:43570483-43570924
  • TAA
  • AGGGGTCGTTTGGTAGAGAGTATAAAAATAATGCA

Secondary structure and sequence

TSD    TIR
5'



3' 
TA                  A    ----            CATTA        GC ---------   GTTGCATTAGTAATGGTTGTATTAGTTATATTTGCAGTAGTTATGCATAAATTATTTCTTATGCATTGTTTGATTTGGTGTATTAAAAATAGTATGTATTGTATAAAAATATTTATTTACAAAAATATCCTTCACAATTATGATAGAAAAGATGTAAAAGT
  AGGGGTCGTTTGGTAGAG GTAT    AAAAATAATGCA     GACTGTTA  A         ATG                                                                                                                                                                 
  |||||||||||||||||| ||||    ||||||||||||     ||||||||  |         |||                                                                                                                                                                 G
  TCCCCAGCAAACCATCTC CATA    TTTTTATTACGT     CGTAATCG  A         TCA                                                                                                                                                                 
AA                  A    GTCG            ----A        -- AACACTTAA   TCAGGGAACAAACCATATGAAAAAGTACGATACATATTGATTTGTGAGATAACACATAACTCCTCACATAATGATTATGGTACCTAAAGATTCTTAATCATTAACGTTTCTATAAATTATGTACGTAATCGTACCAATTTCTGAGTTGATGGGGAGTTTTC
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

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