SE3850041

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_8359
  • Solanum tuberosum
  • SE3850041
  • PIF/harbinger
  • To2
  • chr01:83177125-83177329
  • TAA
  • AGAGGGCGTTTGGATTGGCTTAAAAGTTGGTCAAA

Secondary structure and sequence

TSD    TIR
5'



3' 
TA    GG                    ----------TT       CCTAC      GTCAGTTTTTGACTTCTGTCAAAAATGACTTAAAATAAGTCAAAAACCAA
  AGAG  CGTTTGGATTGGCTTAAAAG            GGTCAAA     TTTTAA                                                  
  ||||  ||||||||||||||||||||            |||||||     ||||||                                                  A
  TCTT  GCAAACCTAACCGAATTTTT            TCAGTTT     TTCAGT                                                  
AA    GG                    TTCATCAAAAAT       --TCA      TTGAATTTACTGAAAATTCAGTTTTTTATTTTTCATCCCCCTCTGGATGT
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

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