SE3830042

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_8360
  • Solanum tuberosum
  • SE3830042
  • hAT
  • Hat7
  • chr12:62999571-63000115
  • TTAATAAA
  • AACAGTGCCGGCTCAATG

Secondary structure and sequence

TSD    TIR
5'



3' 
TTAATA     T C          ------C      ----   TTAGGCATATGCCTTAGGCCCCCAATTTTAGGGGGCCTCTAATTTTTACCACGATAAATTATGTGTTAATTGTTTTTATAGAAAAAATTAATCATCTAAAGCAAATGTATTTTCTTTAAAAAATATATATTATTTTATTCTCCTTAACCTCAATCAAATAGAAGAAATCAAGAAAAATGTTGTTTTGTCTTCTTACATTCTCTTCACTAACTCTTGCGTTGTAATTTTCTAGA
      AACAG G CGGCTCAATG       TTATAA    AAA                                                                                                                                                                                                                                         
      ||||| | ||||||||||       ||||||    |||                                                                                                                                                                                                                                         C
      TTGTC C GCCGAGTTGC       TCCGGA    GCT                                                                                                                                                                                                                                         
AAATAA     C C          ATGAACC      TTTC   TTAAAGTTAATTTCCGGATTTTAGAAAATCGATTTCGTTAATAATATATTTAATAATTGTAATAATATATTCATTATTCAACTGTTTTGACGAATATTTGGAAAAAAAAACAAATTTTTATGTACTTTATTCAGTTAGATTTGTCCGAACATTAAGTGAAATAGGTTTTGTACTAAAAAATGATAACTAAGTATAAAAACTATCTCGAGATTGAATGTATATCATATTTTCCC
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

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