SE3820043

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_8361
  • Solanum tuberosum
  • SE3820043
  • Mutator
  • M4
  • chr04:1536691-1536879
  • ATAGGAAAA
  • GGAAAAATCTTTTTGGCCAGAA

Secondary structure and sequence

TSD    TIR
5'



3' 
ATAGGAAAA     AAT  TTT         -TGATATTTAT     T     TAC     AAAA ATTTTTACCCTTTTAACTTTAATACCTTTTAA
         GGAAA   CT   TGGCCAGAA           CTATG TATTT   CTTTT    C                                
         |||||   ||   |||||||||           ||||| |||||   |||||    |                                C
         CCTTT   GA   ACCGGTCTT           GATAT ATAAA   CAAAT    A                                
AAAAGGATA     CAC  TTT         TTAAAATTTTT     T     ---     ---- TAATTTTGTTTGACTAGAAAAAAAGTAAAAAT
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

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