SE3820044

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_8362
  • Solanum tuberosum
  • SE3820044
  • Mutator
  • M20
  • chr02:67127160-67127658
  • ATTATTTTA
  • TAGGAAAAATTACTT

Secondary structure and sequence

TSD    TIR
5'



3' 
                            ATTATTT       --        A    CACAACACTTCTTTACCTATTCTCAATATTTCCCTACTCTTTCATTAAAATACAAAAATTCCTTATTTTCCCCCAATTCAACTTAACCGGATACTTTATTAGTTTAAGTATCCGCCCGTTATTAATTAAAGTATCCGCGCTGATATATTATGCATCCGCCCGTTAATTAAGTATCTGTGCTGCTAACAACTTAATAATTTAAGTATCC
                                   TAGGAAA  AATTACTT AATA                                                                                                                                                                                                                
                                   |||||||  |||||||| ||||                                                                                                                                                                                                                 
                                   ATTCTTT  TTAATGAA GTAA                                                                                                                                                                                                                
ATTTTATTACATTTTTAATCCGTTTACTGTATCAT       CT        -    AGAGATGAGAAAGTAATTAATGGTTTTTAGGGAAAAAATCACAAAAAGCCTATGTATTATATCGTCACACCTATGAATTATATCGTCGCGCCTATGAAATTAATTATTGCCCGCCTATGAATTTAATAATTCAACAATCGTCGTGTCTATGAATTAATTGCCCGCCTACGTATTATATAGTCGCGCCTATGAAATTAATTATTGCCCG
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

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