SE3810047

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_8365
  • Solanum tuberosum
  • SE3810047
  • Tc1/Mariner
  • St8
  • chr08:3216120-3216383
  • TA
  • TACTCCCTCCGTCCACAATTGTTTGTCAGG

Secondary structure and sequence

TSD    TIR
5'



3' 
                         T    GTAA     --TGC   ---  CCTCAAGAAAAAATTAATACAAGGTGTAATTTGACTAATATAACCCTACTATATCAAGAATACCAAAAGTCTACATAACTTTT
TACTCCCTCCGTCCACAATTGTTTG CAGG    GGTCA     ACA   CC                                                                                   
||||||||||||||||||||||||| ||||    |||||     |||   ||                                                                                   C
ATGAGGGAGGCAGGTGTTAACAAAC GTCC    ATGAT     TCT   GG                                                                                   
                         C    --AT     TTTTA   ACA  TTCTAATTAACAGTTAAGTTTGTTAGTTCTTTGTTAATTAATGAAAAAAGGTTAAAACGGGAATTACTGTCACATCAAGTTAA
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

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