SE3840052

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_8370
  • Solanum tuberosum
  • SE3840052
  • CACTA
  • Ca1
  • chr04:22633351-22633572
  • TCA
  • ACACTATATCAAAAA

Secondary structure and sequence

TSD    TIR
5'



3' 
TC        T      CAACTTT        CTAAATATACACATTAAC     GTCTGAAGTCTTTACCGACATTAGTTAACTGTCATTAGATCCAGTGTCTCTATAGGCCTTA
  ACACTATA CAAAAA       TAGCGGCA                  AAAGA                                                             
  |||||||| ||||||       ||||||||                  |||||                                                             G
  TGTGATGT GTTTTT       ATCGCCGT                  GCTGT                                                             
AC        T      --TTTAC        ---------TAATAAATT     TATCGAATTAACGGCGATTTATACATAAAAATCACCGTTAATCGTAAGAAACATTTACAAG
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

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