Plant MITE

SE3820055

Basic info.

MITE ID
Species
MITE identifier
Superfamily
Family
Genomic location
TSD
TIR

MITE_8373
Solanum tuberosum
SE3820055
Mutator
M4
chr06:19909683-19909909
TATTTGCAC
TGCACGGAAAAATCTTTTTGGCTAGAAAATTT

Secondary structure and sequence

TSD TIR

5'

3'

TATT    ---C     AAT  TTT              --------------     GAATTTGGCCATAATGATATTTTATCTATGTTATTTTACCATTTTAAATATTTTTACCCTTTTAA
    TGCA    GGAAA   CT   TGGCTAGAAAATTT              GGCCA                                                                 
    ||||    |||||   ||   ||||||||||||||              |||||                                                                 C
    ACGT    CCTTT   GA   ACCGGTCTTTTAAA              TTTTT                                                                 
   C    TTAT     CAC  TTT              ACGATCTTTTAAAA     TGATATTAAAAAAATTAAATTTTTATTTAACTACAAAAAAGGTAAAAATCAATTTTCCATAAATT

Get MITE sequence

MITE cluster

MITE ID	MITE identifier	Chr	Start	End
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12

Closed gene

MITE ID	MITE identifier	Chr	Start	End

>SE3820055

TATTTGCACGGAAAAATCTTTTTGGCTAGAAAATTTGGCCAGAATTTGGCCATAATGATATTTTATCTATGTTATTTTACCATTTTAAATATTTTTACCCTTTTAACTTAAATACCTTTTAACTAAAAATGGAAAAAACATCAATTTATTTTTAAATTAAAAAAATTATAGTTTTTTAAAATTTTCTAGCAAAATTTTCTGGCCATTTAGCACTTTCCTATTTGCAC

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