Plant MITE

SE3830056

Basic info.

MITE ID
Species
MITE identifier
Superfamily
Family
Genomic location
TSD
TIR

MITE_8374
Solanum tuberosum
SE3830056
hAT
Hat11
chr08:2084498-2085090
GTGTTTAG
GCAGGGTTGGGCAT

Secondary structure and sequence

TSD TIR

5'

3'

GTGTTTA  -    T       AAA        A          ---      ----    TTTTTGGTTATTTGGTATTTGGTAATTCGGTATTTGGTATGGTATTCGGAGTAAAATTTTAGAATTATGGTATTCCGGTTTGGGTTTGATATGAGACGTTAGTACCATTTGGTATTAGGTATTTCCCGAATACCAAATTATTTACTTAATGAAAGTCATATATCAACATATCCATTACTCATTAGTACAAGTCCAAAGAGAAAGTTAAAGAATAAGCATGAATAATCCAAATATATGTCTT
       GC AGGG TGGGCAT   ATATCGAA ATTGAATTAT   CGAACC    GAAT                                                                                                                                                                                                                                                 
       || |||| |||||||   |||||||| ||||||||||   ||||||    ||||                                                                                                                                                                                                                                                  
       TG TCCC ACCCGTA   CCATAAGC CAAGCCCAAA   TTTAAA    AAAC                                                                                                                                                                                                                                                 
 GATTTG  A    T       -AG        -          GAG      GCCC    TATTAAGTTATTAACCATCAAATTTCATCTATAGTTTAAAAATTTAAAACTAAACCATTAGCCCTTTACTATTTAATTTGAAGCCAAACCATGACATAAGTCATTATGGCATAACTTCAATATCGGTTATCATAATGTTTCAATTATGATAAAGAGGTTAGTTAAAAATATACACCTGCGTGCTATATTATCTTCTAGTTGTTCATTCTTCTGTAGTTCTTTTCCTTTAACTATATTGATT

Get MITE sequence

MITE cluster

MITE ID	MITE identifier	Chr	Start	End
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12

Closed gene

MITE ID	MITE identifier	Chr	Start	End

>SE3830056

GTGTTTAGCAGGGTTGGGCATAAAATATCGAAAATTGAATTATCGAACCGAATTTTTTGGTTATTTGGTATTTGGTAATTCGGTATTTGGTATGGTATTCGGAGTAAAATTTTAGAATTATGGTATTCCGGTTTGGGTTTGATATGAGACGTTAGTACCATTTGGTATTAGGTATTTCCCGAATACCAAATTATTTACTTAATGAAAGTCATATATCAACATATCCATTACTCATTAGTACAAGTCCAAAGAGAAAGTTAAAGAATAAGCATGAATAATCCAAATATATGTCTTTTAGTTATATCAATTTCCTTTTCTTGATGTCTTCTTACTTGTTGATCTTCTATTATATCGTGCGTCCACATATAAAAATTGATTGGAGAAATAGTATTAACTTTGTAATACTATTGGCTATAACTTCAATACGGTATTACTGAATACAGTACCAAACCGAAGTTTAATTTATCATTTCCCGATTACCAAATCAAAATTTAAAAATTTGATATCTACTTTAAACTACCAATTATTGAATTATCAAACCCGAAATTTGAGAAACCCGAACCGAATACCGAATGCCCATCCCTAGTGTTTAG

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