Plant MITE

SE3810057

Basic info.

MITE ID
Species
MITE identifier
Superfamily
Family
Genomic location
TSD
TIR

MITE_8375
Solanum tuberosum
SE3810057
Tc1/Mariner
St2
chr08:33180822-33181063
TA
TACTCCCTCCGTCCCATTTTATATGATGTAGTTT

Secondary structure and sequence

TSD TIR

5'

3'

         C      T     A    G  G        GGTATGGAGTTTAAGAAAGAAAGGAAGACTTTTAAAACTTGTGGTCCAAAATAAATGATAAAAATTTGTGTGGCTGTAAATC
TACTCCCTC GTCCCA TTTAT TGAT TA TTTGACTC                                                                                  
||||||||| |||||| ||||| |||| || ||||||||                                                                                   
ATGAGGGAG CAGGGT AAATA ACTG AT AAAGGAAA                                                                                  
         A      T     C    A  G        AATCAGTCACGGTTTTTCTTACTGTGTAAAGATATAAATCATTGTTAAATTGATATTTTACAGATAAATGGGAATTACTTTA

Get MITE sequence

MITE cluster

MITE ID	MITE identifier	Chr	Start	End
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12

Closed gene

MITE ID	MITE identifier	Chr	Start	End

>SE3810057

TACTCCCTCCGTCCCATTTTATATGATGTAGTTTGACTCGGTATGGAGTTTAAGAAAGAAAGGAAGACTTTTAAAACTTGTGGTCCAAAATAAATGATAAAAATTTGTGTGGCTGTAAATCATTTCATTAAGGGTAAATAGACATTTTATAGTTAAATTGTTACTAAATATAGAAATGTGTCATTCTTTTTGGCACTGACTAAAAAGGAAAGTAAGTCACATAAATTGGGACAGAGGGAGTA

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