Plant MITE

SE3830058

Basic info.

MITE ID
Species
MITE identifier
Superfamily
Family
Genomic location
TSD
TIR

MITE_8376
Solanum tuberosum
SE3830058
hAT
Hat12
chr03:11945898-11946215
GTTGAGAG
TTGAGAGCAGTGGCG

Secondary structure and sequence

TSD TIR

5'

3'

G  GA  G        TA    CATGTATGCCAGGGTGTCCAATTGGACACCCTTCGTCGGAAAAAAATACCGCATATACAAGTAAAATTATATACAAAGTGATTAAATAACATATTTTGGACACCCTTGACATAATAGGTTGTTATAGCCTAGTGGTTT
 TT  GA CAGTGGCG  GGCA                                                                                                                                          
 ||  || ||||||||  ||||                                                                                                                                           
 AG  TT GTCACCGC  CTCG                                                                                                                                          
G  AG  G        --    GTCCTTAAAGTCCTTTTCCCAGGTTTTTAATTTATTGTTTTCAAGAAAAATTTTTCCCCTTTTATAACAAGGTACACTCTAAACTTGTGCACTCGTGACTGAGTAATTTCTACAGCTTTGTATGTAAGTTCTATAGAA

Get MITE sequence

MITE cluster

MITE ID	MITE identifier	Chr	Start	End
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12

Closed gene

MITE ID	MITE identifier	Chr	Start	End

>SE3830058

GTTGAGAGCAGTGGCGTAGGCACATGTATGCCAGGGTGTCCAATTGGACACCCTTCGTCGGAAAAAAATACCGCATATACAAGTAAAATTATATACAAAGTGATTAAATAACATATTTTGGACACCCTTGACATAATAGGTTGTTATAGCCTAGTGGTTTAAGATATCTTGAATGTATGTTTCGACATCTTTAATGAGTCAGTGCTCACGTGTTCAAATCTCACATGGAACAATATTTTCCCCTTTTTAAAAAGAACTTTTGTTATTTAATTTTTGGACCCTTTTCCTGAAATTCCTGGCTCCGCCACTGGTTGAGAG

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