SE3830062

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_8380
  • Solanum tuberosum
  • SE3830062
  • hAT
  • Hat10
  • chr08:6399529-6399998
  • GTCACCAT
  • ATCTAAGTTGCTCGGACTC

Secondary structure and sequence

TSD    TIR
5'



3' 
GTCACC                   TT    TTTGGTGCCGCACCCATGTCGACACGACATGAGTGTGGGTGTGGGATCTGTGCCCGATTTGGTCAACCTATTTTGGGTACTTTGACCAAAATCGATGGGGAAAGTTTGGACAGTTTTAATGATTTATGTAATCAATACAAAAGCTAAGGTGAAATTGAAGAAAATGGAATACCTTTTATATAGAAATTTCTGTGTCACTCCTTAT
      ATCTAAGTTGCTCGGACTC  CACT                                                                                                                                                                                                             
      |||||||||||||||||||  ||||                                                                                                                                                                                                              
      TGGATTCAACGAGCCTGAG  CCCA                                                                                                                                                                                                             
TACCAC                   --    CGCCTACAGGCTATGCCCACGCCTAGATCTCCAACCTAGGAAGTACTAGATTAAAAATTCTTAGCCTCTATACTTAGGTATATACCTATGCCTACGCCACTAAGTTGATTTTTATTAATTTTATAGATTTTTTATCTCAATATTTTGGATTTAATACTCTATAATACACCTCTTGAATTCCTCTTATAACCTGACTCTAATTTCC
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

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