SE3820063

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_8381
  • Solanum tuberosum
  • SE3820063
  • Mutator
  • M4
  • chr04:4633832-4634052
  • TTTTCAAAA
  • TTTCAAAAGG

Secondary structure and sequence

TSD    TIR
5'



3' 
T   C      AAAAATCCTTT             -----------      A   -    TTTT  TTGTGTTATTTTACCTTTTTGAATATTTTTACCTTTTTAACTTTAATATCT
 TTT AAAAGG           TGGCCAGAAAATT           TGGCCA AAT GGTA    AC                                                   
 ||| ||||||           |||||||||||||           |||||| ||| ||||    ||                                                   T
 AAA TTTTCC           ACCGGTCTTTTAA           ACCGGT TTA ATTT    TT                                                   
A   C      CATTACGATTT             ACTAGTCTTAA      C   A    ----  AATATTATAAAAATAAATTTATTTAACTAGAAAAAAAGTAAAAAATTAATT
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

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