SE3820064

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_8382
  • Solanum tuberosum
  • SE3820064
  • Mutator
  • M24
  • chr12:9533668-9534402
  • TATTATTAA
  • AGGGAAAAGGGTAAAAAATGCCCTTAAACTATAAGAAAGGAACAAAAACGTTTGTAGTTTGGTCCAAAAATTCCCTTCCCGTCAATACTTTGGT

Secondary structure and sequence

TSD    TIR
5'



3' 
TATTATTA           T                    AA              -------               C       T     C                --------      -   T  TTATTGTTATTTTTGGTAAAAAATGCTCATTTTTTCAAATAAATATATTATTTATTTTATTTTTAACACATTCTTTTTCTAATAATATTTTTTAAAAAATTAACAAATGTTTATCTTACTTCAATTCAGAAAAAAATTAAATGAAAATATTTCTTATTTTATTATAATTATTTTTTATCGTAAATAAAAATATAAATTAATGATGGATATACTATGATCTTATACATATGACATATATTATCTAT
        AGGGAAAAGGG AAAAAATGCCCTTAAACTAT  GAAAGGAACAAAAA       CGTTTGTAGTTTGGT CAAAAAT CCCTT CCGTCAATACTTTGGT        CCAAAA ATG CA                                                                                                                                                                                                                                                     
        ||||||||||| ||||||||||||||||||||  ||||||||||||||       ||||||||||||||| ||||||| ||||| ||||||||||||||||        |||||| ||| ||                                                                                                                                                                                                                                                     C
        TCCCTTTTCCC TTTTTTACGGGAATTTGATA  CTTTTCTTGTTTTT       GCAAATATCAAACCG GTTTTTA GGGAA GGCAGTTATGAAACCA        TGGGAA GTC GT                                                                                                                                                                                                                                                     
AATTATTA           T                    CA              ACGGGAG               A       C     T                AGTTTTTA      C   A  TATGAAACCAGGTTTTTGCCGGGATATTAACGATTTTCCCAGTTTTTACGGGAAAAGGCTTATTCATATAATAAAAAAGAAAAATTTGTGTAAAATAAGAATTAATTTTATAATAATTTTTTGGTACAAGAACAAAAGAAAGAAAATTTTAAGTGAAATTGTTTATTTTTATCGTTCCTTATAAAAAATAAAGAAGAATTAGAGTAGAATAGTTAATTTTATCTTATTGAAGTACATGGGAAAGG
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

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