SE3830066

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_8384
  • Solanum tuberosum
  • SE3830066
  • hAT
  • Hat15
  • chr05:4766214-4766700
  • GAGCCAAG
  • GAGC

Secondary structure and sequence

TSD    TIR
5'



3'
    A  CAAG   A     A   A  ATTTCAAGAAGACAGGTGCACCATTGTCAGGGGCGGCTCTGTCCCTTTAAGAAAAAAGGCAACTAATTTAGGCTTTCAAATTTGAGGAGCCTTATTTATTTTAGCAATAATAAGTATAGGTTTTTCATAAGAAAAATATTAAATACATTTGCAAAATAAATAAATTTATTATAAGAAAAAGTCATTAGAAGAAGTTTAAAAAAGGCTGAATGCAGAAACT
   G GC    CAG GGCGA TCT GA                                                                                                                                                                                                                            
   | ||    ||| ||||| ||| ||                                                                                                                                                                                                                            C
   C CG    GTC CCGCT TAA AT                                                                                                                                                                                                                            
GAA -  --AG   C     -   -  TCGAATTTTTTACCCAGTGAACTTGGGCACCAGTAGGCTGTTTTAAGCTACATAATGTACATATTAAAAATTTTATACAGTTTATCGTTGACTTACTTGGGTACTTGTGTTTGTTGACCTACCAAGTGACCAAACTCACAGTCAAAAGGTGAAACTCCAACTCCCTAGCTAAGGGTCTACGACGTAAAAGTGTTGGAACGTAAAATAAAATAAGTGTTTT

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End