SE3820069

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_8387
  • Solanum tuberosum
  • SE3820069
  • Mutator
  • M25
  • chr05:50743-51017
  • TAATTTATA
  • TAGGGAAAATCAC

Secondary structure and sequence

TSD    TIR
5'



3' 
TAATTTA          C  --   C   TACAATTTTTAAAAAATATTTACGATATTTGTCAACATTATTCTTTTAACCATATATAACAATTTGGCTGAATGACAATATTACTAAAAGTTGTGAATGACAGCAATTTT
       TAGGGAAAAT AC  TTA GTG                                                                                                              
       |||||||||| ||  ||| |||                                                                                                               
       ATCCTTTTTA TG  TTC ACT                                                                                                              
ATTTTTA          A  TA   -   TCAGAAAATAAATTATTAATGGTGAAAATTCATATGAAAATTAAATAATGGTAAAAACAGTTGAAAATCGTTATGAACGAATTTTGTTAAAACAAGGAAATTTGAATCGT
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

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