Plant MITE

SE3820070

Basic info.

MITE ID
Species
MITE identifier
Superfamily
Family
Genomic location
TSD
TIR

MITE_8388
Solanum tuberosum
SE3820070
Mutator
M4
chr01:87636400-87636617
ATTTAAAAA
AAAAGGGTAATGCTAAATGGTCAGAAATTTTGGCCA

Secondary structure and sequence

TSD TIR

5'

3'

ATTTA       -T   G  AAA          T     C  -AAA     AA    TT TAATATTCTTTTTATTTAAAAATAAATAGATCTTTTTTTTTTTTTTAATTAA
     AAAAGGG  AAT CT   TGGTCAGAAA TTTGG CA    ATTTA  TTTT  A                                                    
     |||||||  ||| ||   |||||||||| ||||| ||    |||||  ||||  |                                                    A
     TTTTCCT  TTA GA   ACCGGTCTTT AAACC GT    CCATT  TTAT  T                                                    
AAAAA       TT   G  -AA          T     A  CTTA     --    -- TATACAATAAAATGGAAAAAACTTGTAAAAATGGGAAAATTAAAATTATGGA

Get MITE sequence

MITE cluster

MITE ID	MITE identifier	Chr	Start	End
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12

Closed gene

MITE ID	MITE identifier	Chr	Start	End

>SE3820070

ATTTAAAAAGGGTAATGCTAAATGGTCAGAAATTTTGGCCAAAAATTTAAATTTTTTATAATATTCTTTTTATTTAAAAATAAATAGATCTTTTTTTTTTTTTTAATTAAAAGGTATTAAAATTAAAAGGGTAAAAATGTTCAAAAAAGGTAAAATAACATATTTATTTTACCATTCTGACCAAATTTTCTGGCCAAAAGGATTTTTCCTTTTAAAAA

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