SE3830073

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_8391
  • Solanum tuberosum
  • SE3830073
  • hAT
  • Hat10
  • chr11:25604677-25605163
  • ATTTCCAC
  • CTAAGTTGCTCAAACTC

Secondary structure and sequence

TSD    TIR
5'



3' 
ATTTCCAC          CAA    TTCCCT     -  -CC     C TGTCAGCACGACATAGGTGTGGGTGTGGGATCTGTACTCGATTTGGTCAACCGATTTTTGGTACTTTGACCAAATTCAAGGGAGGAATTCTAGACAGATCCAATGGTTTCTGTAATCTAAACAAAAGCTAAGGTGAAATTGAAGAAAATGGAATTCCTTGTATATATAAATTTCTATTGATACTCCTTTTCCTTTTA
        CTAAGTTGCT   ACTC      TTCGG TG   GCACC A                                                                                                                                                                                                     
        ||||||||||   ||||      ||||| ||   ||||| |                                                                                                                                                                                                     T
        GATTCAACGA   TGAG      AAGCC AC   CTATG C                                                                                                                                                                                                     
CACCTTTA          ACC    ---TCC     C  AGA     - CCACGCATAGATCTCCAGCCTAGGAGATACTAGATTTAAATTTTAAGCCCTTATGTCTAGGTACGTATACCTATGCCCACACCCCTAAGCCGATTTTTGTTAAGTTTATAGATGTTATCTCAATATTTTGGATTTAATACTCTATAATACCTTTTGAACTCTTCTTTATAACTAGTTCTCCTTTTAAAACTTTTCTC
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

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