Plant MITE

SE3820074

Basic info.

MITE ID
Species
MITE identifier
Superfamily
Family
Genomic location
TSD
TIR

MITE_8392
Solanum tuberosum
SE3820074
Mutator
M8
chr04:217952-218274
TGCTATAAG
TAAGGCATAATACATAAATATGCCCTTTAACTTGGCTTCAAATTACATTTATGCCCTTCAACTTTGGGTGTGCACAAGTAGACACTTAAACTTGTATAAAGTTGAACAAATAGACACA

Secondary structure and sequence

TSD TIR

5'

3'

TGCTA                   A   C                AA  A                                       C               G        A        ---   -  CCTACATGGAATCCTACGTGTCATTTTTTGT
     TAAGGCATAATACATAAAT TGC CTTTAACTTGGCTTCA  TT CATTTATGCCCTTCAACTTTGGGTGTGCACAAGTAGACA TTAAACTTGTATAAA TTGAACAA TAGACACA   CAT GT                               
     ||||||||||||||||||| ||| ||||||||||||||||  || ||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |||||||| ||||||||   ||| ||                               C
     GTTCCGTATTATGTATTTA ACG GAAATTGAACTGGAGT  AG GTAAATACGGGAAGTTGAAACCTATACGTGTTCATCTGT AATTTGAACATATTT AGCTTGTT ATCTGTGT   CAG AT                               
ATATC                   C   A                AA  C                                       A               G        C        ACT   C  GCACTGTGTTATGTGCATCCTGTGGTGCATC

Get MITE sequence

MITE cluster

MITE ID	MITE identifier	Chr	Start	End
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12

Closed gene

MITE ID	MITE identifier	Chr	Start	End

>SE3820074

TGCTATAAGGCATAATACATAAATATGCCCTTTAACTTGGCTTCAAATTACATTTATGCCCTTCAACTTTGGGTGTGCACAAGTAGACACTTAAACTTGTATAAAGTTGAACAAATAGACACACATGTCCTACATGGAATCCTACGTGTCATTTTTTGTCCTACGTGGTGTCCTACGTGTATTGTGTCACGTACGACTCATGTGTCTACTTGTTCGAGTTTATACAAGTTTAAATGTCTACTTGTGCATATCCAAAGTTGAAGGGCATAAATGCGAAATGAGGTCAAGTTAAAGAGCACATTTATGTATTATGCCTTGCTATA

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