Plant MITE

SE3820075

Basic info.

MITE ID
Species
MITE identifier
Superfamily
Family
Genomic location
TSD
TIR

MITE_8393
Solanum tuberosum
SE3820075
Mutator
M6
chr03:1476709-1477019
AAATATAAG
AGGGAAAAGGGTCTGAAAAATACTTCAACTTTGGCCGAAATTGTTGTTACGATACCAAACTTTATGGATGACCTTTTACCCCTGCATTATTTAATAGTGTATTTTAAAGGTATATATGTGCCCACGTGAACACATTACTATT

Secondary structure and sequence

TSD TIR

5'

3'

AAATATA                                                              TA    --T              -GC                                   C C     A   -   TAC    TAAAA
       AGGGAAAAGGGTCTGAAAAATACTTCAACTTTGGCCGAAATTGTTGTTACGATACCAAACTT  TGGA   GACCTTTTACCCCT   ATTATTTAATAGTGTATTTTAAAGGTATATATGTG C ACGTG ACA CAT   TATT     
       ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||  ||||   ||||||||||||||   ||||||||||||||||||||||||||||||||||| | ||||| ||| |||   ||||     T
       TCCCTTTTCCCAGACTTTTTATGAGGTTGAAACTGGCTTTAACAACAATGCTATGGTTTGAA  ACCT   CTGGAAAATGGGGG   TGATAAATTATCACATAAAATTTCCATATATACAC G TGCAC TGT GTA   ATAA     
ATATAAA                                                              --    TTC              ACA                                   A A     C   A   TTT    CGTAG

Get MITE sequence

MITE cluster

MITE ID	MITE identifier	Chr	Start	End
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12

Closed gene

MITE ID	MITE identifier	Chr	Start	End

>SE3820075

AAATATAAGGGAAAAGGGTCTGAAAAATACTTCAACTTTGGCCGAAATTGTTGTTACGATACCAAACTTTATGGATGACCTTTTACCCCTGCATTATTTAATAGTGTATTTTAAAGGTATATATGTGCCCACGTGAACACATTACTATTTAAAATGATGCAATATTTATGATGTCCACGTAGACACATATATACCTTTAAAATACACTATTAAATAGTACAGGGGGTAAAAGGTCCTTTCCAAAGTTTGGTATCGTAACAACAATTTCGGTCAAAGTTGGAGTATTTTTCAGACCCTTTTCCCTAAATATA

Copy Cancel