Plant MITE

SE3810084

Basic info.

MITE ID
Species
MITE identifier
Superfamily
Family
Genomic location
TSD
TIR

MITE_8402
Solanum tuberosum
SE3810084
Tc1/Mariner
St3
PGSC0003DMB000000305:693720-693965
TA
TACTCCCTTCGTCCATCTTTACTTGTCCACTAT

Secondary structure and sequence

TSD TIR

5'

3'

         C     T TT  C     C     ACTATTTT  GATATCCAACAATACTTGTCCAGTTTATAAAATCAATGAATAATTGTGTCTATTTTACCCTTGCTATTAAAACCTATTCATTT
TACTCCCTT GTCCA C  TA TTGTC ACTAT        GA                                                                                   
||||||||| ||||| |  || ||||| |||||        ||                                                                                    
ATGAGGGAG CAGGT G  AT AACAG TGATA        TG                                                                                   
         A     T TT  C     A     ------AC  AACTGTGTCTCTAAGTTTTCGTAATTTACTACTCACTAAAATAGTTTAGTGGGAATAATTTATATTCAGTAGATTTGTAACTT

Get MITE sequence

MITE cluster

MITE ID	MITE identifier	Chr	Start	End
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12

Closed gene

MITE ID	MITE identifier	Chr	Start	End

>SE3810084

TACTCCCTTCGTCCATCTTTACTTGTCCACTATACTATTTTGAGATATCCAACAATACTTGTCCAGTTTATAAAATCAATGAATAATTGTGTCTATTTTACCCTTGCTATTAAAACCTATTCATTTTTCAATGTTTAGATGACTTATATTTAATAAGGGTGATTTGATAAAATCACTCATCATTTAATGCTTTTGAATCTCTGTGTCAAGTCAATAGTAGACAACTATTGTTGGACAGAGGGAGTA

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