SE3810089

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_8407
  • Solanum tuberosum
  • SE3810089
  • Tc1/Mariner
  • St6
  • chr01:4125348-4125610
  • TA
  • TACTCCCTCCGTCCCATTTTATGTGGCAATTTTTGGATTTCGAGATTCAAACAAGTTTATCTTTGACCGTAAATTTTTCATAAATCTTT

Secondary structure and sequence

TSD    TIR
5'



3'
         C      T           A      GA   C    T       A     TC        TA     TT    ---       TAAACA       T  TCAA    -----     C    A   CT
TACTCCCTC GTCCCA TTTATGTGGCA TTTTTG  TTT GAGA TCAAACA GTTTA  TTTGACCG  AATTT  CATA   AATCTTT      TTTTGAA TA    TTAT     TGTGA TTAT GTA  
||||||||| |||||| ||||||||||| ||||||  ||| |||| ||||||| |||||  ||||||||  |||||  ||||   |||||||      ||||||| ||    ||||     ||||| |||| |||  T
ATGAGGGAG CAGGGT AAATACACTGT AAAAGC  AAA CTCT AGTTTGT CAAAT  AAACTGGC  TTAAA  GTGT   TTAGAAG      AAAACTT GT    AATA     ACATT GATA CAT  
         A      T           G      AA   A    C       -     TC        CC     -C    ACC       -TTAAA       T  TTTA    TATAA     T    -   TT

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End