SE3830091

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_8409
  • Solanum tuberosum
  • SE3830091
  • hAT
  • Hat3
  • chr01:1980226-1980429
  • AACGTAAC
  • ACGTAACCAGTGGCGGAGCCA

Secondary structure and sequence

TSD    TIR
5'



3' 
  A    AAC              GGATTTT    A        CAAAA    AAAATATAGACACACGAAGTAGCCGAAGGGGGGTCGACATCTACTATATATACC
   ACGT   CAGTGGCGGAGCCA       CAAT AGGGGGTT     TCTA                                                      
   ||||   ||||||||||||||       |||| ||||||||     ||||                                                       
   TGCA   GTCACCGCCTCGGT       GTTA TCCCCCAG     AGGC                                                      
CAA    --A              --GGAAT    C        ----T    TGGGGGGAAGCCGCCTTTTAATATACTAAATATGTACCAATTTTATTAAAAAAT
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

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