SE3850093

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_8411
  • Solanum tuberosum
  • SE3850093
  • PIF/harbinger
  • To5
  • PGSC0003DMB000000305:661546-662053
  • TAA
  • AGGGGTCGTTTGGTAGAGTGTATAAGAATAATGC

Secondary structure and sequence

TSD    TIR
5'



3'
TA                       ---A          TGAATATG           ------------      GCATTAGTAATGCAAGCATTAGTAATGCTTGCATTAGTTATGCTTGCATTATTTCTTATACATTGTTTGGTTTAATGTATTGGAAATAGCAAGCCTTGTATAAAGACTATTAAAAAATATTTGTTTACAAAAATACCCCCACATTATTATAATTATTATAATTATTATAATTATAATTATTATTAGTAT
  AGGGGTCGTTTGGTAGAGTGTAT    AGAATAATGC        ATGTATTAGTA            ATGCAT                                                                                                                                                                                             
  |||||||||||||||||||||||    ||||||||||        |||||||||||            ||||||                                                                                                                                                                                             T
  TCTCCAGCAAACCATCTCACATA    TTTTATTGCG        TACGTAATCGT            TCATGG                                                                                                                                                                                             
AA                       ATCC          --------           AACACATAATGA      AACAAACCATGAGAAAAGATTGGATACATATTGATTACCAACGTAATCAATATGTGAGATAACACATAATTCCACACATAACGATTATGGTACCTAAAGATCTATAATCGTTACGTTACCAAAATTACGTACGTAATCTAATTGATTACTGTTTTTGATGGGAGATTCGGATTATTATTATTATTATTA

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End