SE3820095

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_8413
  • Solanum tuberosum
  • SE3820095
  • Mutator
  • M28
  • chr08:33268126-33268820
  • AAAAAATAA
  • GGCTAAAGTATTCATTACCACTCTGAACTTGAAGCTTTTTACTCGGTGTACACCTAAACTATATTCCGTTTTAATTACCCCCCC

Secondary structure and sequence

TSD    TIR
5'



3'
AAAAAATAA            C      A                     CTC                       G         C      TCCCCCG                                 A           -G G  GAAAT    A    A T TACTA    CG  -A       ----A    TTGCCACATCATAAATCTACAACGGTAAAAAAAATGTAAAATCTCCATTTTTCTTTAATATTTGGCATATTTTAAACGAAAAATAGGGCAAAATGTAAATGAAAAGTAAAGGAAACAAAGATTAACACTTGGTTAGAATTTCAAACAAATTTGAAAT
         GGCTAAAGTATT ATTACC CTCTGAACTTGAAGCTTTTTA   GGTGTACACCTAAACTATATTCC TTTTAATTA CCCCCC       GAACTTGTTTATTCCTCCATCGCGTACACCTTT TTGTCCACCTG  C TA     TGAC ACAC C C     GGCA  TG  GAAAGTG     TTTT                                                                                                                                                             
         |||||||||||| |||||| |||||||||||||||||||||   ||||||||||||||||||||||| ||||||||| ||||||       ||||||||||||||||||||||||||||||||| |||||||||||  | ||     |||| |||| | |     ||||  ||  |||||||     ||||                                                                                                                                                              
         CCGATTTCATAA TAATGG GGGACTTGAACTTCGAAAAAT   CCACATGTGGATTTGATATAAGG AAAATTAAT GGGGGG       CTTGAACAAATAAGGAGGTAGTGCATGTGGAAA AACAGGTGGAC  G AT     ACTG TGTG G G     CCGT  AC  TTTTCAC     CACC                                                                                                                                                             
AATAAAAAA            A      G                     AAA                       -         C      -------                                 A           GA G  --GAC    A    C C ---CG    TG  CG       CACTA    TAAAGGTGGACCTATTTATTATCGGTGGATCTATTTAATTATACCGTTTTTTATTTATAGTTTGTAAGTAACAAATTTTCAATAAAAACTTATTCCCGACTAAAGTGCCTTGAGGAAGACCTAAACCCAAAAAGATCTGCACGTCAACCAGCTAATT

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End