Plant MITE

SE3810097

Basic info.

MITE ID
Species
MITE identifier
Superfamily
Family
Genomic location
TSD
TIR

MITE_8415
Solanum tuberosum
SE3810097
Tc1/Mariner
St12
PGSC0003DMB000001144:16900-17209
TA
TACTCCCTCCGTCCCTTTTTAGTTGTCCA

Secondary structure and sequence

TSD TIR

5'

3'

                T    G       --------------      AAA  GCACACAGATTAAGGCAACAATGATTAGCACAGTGAAGTTACAATTTTACCCTTATGACAACTTTTCACTTCAAAATTACAACCACTTATTTGAATTCAAGTGAAATAA
TACTCCCTCCGTCCCT TTTA TTGTCCA              CTTTAG   TG                                                                                                             
|||||||||||||||| |||| |||||||              ||||||   ||                                                                                                             A
ATGAGGGAGGCAGGGA AAAT AACAGGT              CAACAG   GG                                                                                                             
                T    G       ATAAAGGAAAAAAC      ---  ATAAATCAACAGGTAAAACTGTTTAGTTCTTTCCTGTTGTTTAAAAAAGGATAATATGGGAATAAATGTGAAGAACTTTTAACATTTTCACATACAACAAAGGGAGGTT

Get MITE sequence

MITE cluster

MITE ID	MITE identifier	Chr	Start	End
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12

Closed gene

MITE ID	MITE identifier	Chr	Start	End

>SE3810097

TACTCCCTCCGTCCCTTTTTAGTTGTCCACTTTAGAAATGGCACACAGATTAAGGCAACAATGATTAGCACAGTGAAGTTACAATTTTACCCTTATGACAACTTTTCACTTCAAAATTACAACCACTTATTTGAATTCAAGTGAAATAAATTGGAGGGAAACAACATACACTTTTACAATTTTCAAGAAGTGTAAATAAGGGTATAATAGGAAAAAATTTGTTGTCCTTTCTTGATTTGTCAAAATGGACAACTAAATAGGGACAACCAAAAAAGGAAATATGGACAAGTAAATAGGGACGGAGGGAGTA

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