SE3830098

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_8416
  • Solanum tuberosum
  • SE3830098
  • hAT
  • Hat20
  • chr02:68402387-68403116
  • TGTGGAAG
  • GTAGAGCCGTCAATATGGTTTAGGCCC

Secondary structure and sequence

TSD    TIR
5'



3'
TGTGGAA       C        -    TA     GTT    ----      GG  TAA    --   T  ---  TAGGGTTGTTTTTTAGCCCATTTAAGAAAAGGACTTTTTAGCGCGGCATGAATAAGTCTGTCGATTTGCGGGGCTTGAGAAATATGGATAGGGCCGGCCCGTGTGCCATATAAAATTAATAAAAAATAAAAATAAAATAGAGTATTAAAAATAATAAAAGTTTAAAATATTACAATTTAAATACAAATTATATTTATAAAATATGTACTACATAAAATAAAGTTCCTAAAAATTATAGGGAATCACTACATATGTCATAGCCTATGGAATATTATCATAGTTTTTGTGTTTTATTATGA
       GTAGAGC GTCAATAT GGTT  GGCCC   GGGC    CGGCCT  CC   CCCG  TGA TT   GA                                                                                                                                                                                                                                                                                                           
       ||||||| |||||||| ||||  |||||   ||||    ||||||  ||   ||||  ||| ||   ||                                                                                                                                                                                                                                                                                                           T
       TATCTCG CAGTTATA CCAA  CTGGG   TGGG    ACCCGA  TT   GGGT  GGC TG   CG                                                                                                                                                                                                                                                                                                           
GAAGGTG       A        A    --     ---    GTAG      --  ---    AT   -  AAA  TTAAACTGCCCAGTCCGGCCCGATCGGGTAAAAAATACACCTGGTTTTTTACCAAACAGGTCGGGTGTTCACACACCTGATGCCCGAAACGGCCCAGTTGATAGAAAAGAATTTTCATATAAAAAATATTAAAAAATTTAATTTAATATTAAATTTTTATAGTAGTATTTATAGCTGATTACAATGATGAACGATTAGTTTATGTGTTTATTTTAATACATATATTATAAATAATTTAAACTAAAGTTCATTTTTGTATTTATCGATTAATATTTATAATTGGATTAAAAAAAGGTTAC

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End