SE3840099

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_8417
  • Solanum tuberosum
  • SE3840099
  • CACTA
  • Ca1
  • chr10:37467468-37467681
  • TTT
  • CACTACATCAAAAATGATCTTTAGCAGCAATTAATTGGC

Secondary structure and sequence

TSD    TIR
5'



3' 
TTT       T          C      A     T   T             C  TATTTATTTTTAGCGGCAATTAACACTCTTAGTATATGTCCCTAAAGGCTTT
   CACTACA CAAAAATGAT TTTAGC GCAAT AAT GGCAATTGCCGCT AA                                                    
   ||||||| |||||||||| |||||| ||||| ||| ||||||||||||| ||                                                    A
   GTGATGT GTTTTTGTTG AAATCG CGTTA TTA CTGTGTGATTATT TC                                                    
TTT       T          A      C     T   T             -  TCACGATTTCAGAAATGGTCATAATCAATTCACTGTAATCTAGGTTACAGCG
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

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