SE3810101

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_8419
  • Solanum tuberosum
  • SE3810101
  • Tc1/Mariner
  • St11
  • chr07:4204926-4205198
  • TA
  • TACTCCCTCCGTCCCATATTAGTTGATCATT

Secondary structure and sequence

TSD    TIR
5'



3' 
      C  -                      CTCCTTTTAAGTTTTAACA     ATTAAGAAATCATAA       --  ---- AA  --------------   CTAATTCACCCTTTAAAAATCTTTTTATAAATTTTAGAAACAAATGTGAACACTT
TACTCC TC CGTCCCATATTAGTTGATCATT                   CGCAT               ATAAGAA  GA    T  TT              TTA                                                       
|||||| || ||||||||||||||||||||||                   |||||               |||||||  ||    |  ||              |||                                                        
ATGAGG AG GCAGGGTATAATCAACTAGTAG                   TTTTT               ATTAACA  GT    T  CA              TTA                                                       
      -  T                      --------------AATAA     ---------------       AG  ATAA --  ACAGGTAGAATGAT   ATTCTTTTATAATAATGTAAAAAAGATGTAATGAGAACGATGATTAATAAAAACT
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

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