SE3830102

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_8420
  • Solanum tuberosum
  • SE3830102
  • hAT
  • Hat12
  • chr07:44218786-44219105
  • CACTCGCC
  • CAGTGGCG

Secondary structure and sequence

TSD    TIR
5'



3' 
CACTCGCC        TA   A  TGTATGCGCCAAGGTGTCCAATTGGACACCCTTCGTCGGAAAAAAATACCGCACATACAAGTAAAATGATACATGAAGTGATTAAATAACATATTTTGGACATCCTTGACATAATAGGTTGTTTTAGCCTAATGGTT
        CAGTGGCG  GGC CA                                                                                                                                         
        ||||||||  ||| ||                                                                                                                                         T
        GTCACCGC  CTC GG                                                                                                                                         
CCGCTCAC        --   -  TCCTTAAAGTACTTCTCCCAGGTTTTTAATTTATTGTTTTCGAGAAAAATTTTTCCCTTTTTTTAACAAAGTTCATTCTAAATTTGTGCGCTCGTGATTGAGTAATTTTTACAGATTTGTGTGTAAGTTCTGTAGAA
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

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